RnoEX0062078 @ rn6
Exon Skipping
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8454002-8465697:+
Coord C1 exon
chr3:8454002-8454070
Coord A exon
chr3:8464272-8464442
Coord C2 exon
chr3:8465537-8465697
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTCCTTTGCCTCAGAAT
3' ss Score
9.25
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAG
Seq A exon
AATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGAAAAGCTGGTCTCGGTGATGCGATTGAGTGACCTTTCTACAGAAGACGACGATTCTGGTCACTGTAAGATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAG
Seq C2 exon
GTCAAGATGCAGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAGGAAGAACTGGAGGAGGTAGCACATGAGCTTGCAGAGACGGAGCATGAGAACACAGTGCTCAGACACAACATCGAGCGCATCAAGGAGGAGAAGGACTTCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584-'17-21,'17-19,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=0.564 C2=0.722
Domain overlap (PFAM):
C1:
NO
A:
PF104734=CENP-F_leu_zip=PU(26.7=42.1)
C2:
PF104734=CENP-F_leu_zip=FE(58.9=100)
Main Skipping Isoform:
ENSRNOT00000041921fB10047
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCATAAGCGCGGAATGAA
R:
GGTGAAGTCCTTCTCCTCCTTG
Band lengths:
226-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]