BtaEX6046427 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99051434-99057093:+
Coord C1 exon
chr11:99051434-99051559
Coord A exon
chr11:99055885-99056055
Coord C2 exon
chr11:99056933-99057093
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCCTCTACATCAGAAT
3' ss Score
6.38
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCCGCCCGGCATGTGGGATGCAATTGGGAG
Seq A exon
AATCCACCTCACTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTTTTGCACGCGGTTAAGTGACCTCTCTACAGAAGATGACGACTCCGGCCACTGTAAAATGAACCGTTACGATAAGAAGATTGACAGTTTAATGAACGCGGTTGGTTGTCTCAAGTCTGAG
Seq C2 exon
GTCAAGATGCAGAAGGGAGAGCGCCAGATGGCCAAAAGGTTCCTGGAGGAGCGGAAGGAGGAGCTGGAGGAGGTGGCCCAAGAGCTGGCCGAGACCGAGCACGAGAACACGGTGCTGCGGCACAACATAGAGCGCATCAAGGAGGAGAAGGACTACACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567-'10-12,'10-10,13-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=0.211 C2=0.685
Domain overlap (PFAM):
C1:
NO
A:
PF104734=CENP-F_leu_zip=PU(26.9=43.9)
C2:
PF104734=CENP-F_leu_zip=FE(57.0=100)
Main Skipping Isoform:
ENSBTAT00000020325fB4881
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGGACACCGTGAATGTG
R:
CTTCTCCTCCTTGATGCGCTC
Band lengths:
255-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]