DreEX6050589 @ danRer10
Exon Skipping
Gene
ENSDARG00000020702 | odf2b
Description
outer dense fiber of sperm tails 2b [Source:ZFIN;Acc:ZDB-GENE-041008-119]
Coordinates
chr8:31007459-31009086:+
Coord C1 exon
chr8:31007459-31007560
Coord A exon
chr8:31008142-31008306
Coord C2 exon
chr8:31008899-31009086
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTCCTTAAAAATTCCATCAGGGG
3' ss Score
4.65
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
CAGGCAAAAGTGAGCAGTTTGCGATCCACTGCCAGTGTGAAGGTCCGAGCTCCATGGGTTCCTCCTGGAAAGAGCTCAACACGAAGACAGTACAAATGGGAG
Seq A exon
GGGGCTACTCGCTGCTTGGAGATCACTCCTGGACTCTCCTCTTCCTCACCTCCACTCCGGCTCACTGACCTGTCCAGTGAAGAAGAGGATCCAGGAGGAGCCATCAACAAATATGAGAGAAAACTCGAAAGCCTAATGTCGGAGGTTGACTGTTTAAAAAATGAG
Seq C2 exon
GTGAAATTACGGCAAGCAGAGGAGCACCTGAAGCACCAGTCACAGCAGCTGAGTGCCTGTCAGCATTTGATTGACCAGCATGAGGAAAGACTTGAGGAAGCTAGTAAAAGCTTGAGGAGGTCAAAACGTGAAAACACAGATCTGCGTAGCTCTGCAGACGGGACACAGGGTGAACCTGGAGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020702-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=0.573 C2=0.969
Domain overlap (PFAM):
C1:
NO
A:
PF101864=Atg14=PU(41.8=69.1)
C2:
PF101864=Atg14=PD(56.0=96.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGCGATCCACTGCCAG
R:
GTCTGCAGAGCTACGCAGATC
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]