HsaEX0044599 @ hg19

Exon Skipping

Gene

ENSG00000136811 | ODF2

Description

outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]

Coordinates

chr9:131223221-131233747:+

Coord C1 exon

chr9:131223221-131223346

Coord A exon

chr9:131231462-131231632

Coord C2 exon

chr9:131233587-131233747

Length

171 bp

Sequences

Splice sites

3' ss Seq

TTCTCCCTCCTCTACATCAGAAT

3' ss Score

6.38

5' ss Seq

GAGGTGAGG

5' ss Score

8.41

Exon sequences

Seq C1 exon

AAATCTCACAAGCGAGGAATGAAAGGGGACACTGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCCTGTGGGATGCAAGTGGGAG

Seq A exon

AATCCACCTCATTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTCAGTGATGCGGTTAAGTGACCTCTCTACAGAAGATGATGACTCAGGTCACTGTAAAATGAACCGTTATGATAAGAAGATTGATAGTCTAATGAATGCGGTTGGTTGTCTGAAGTCTGAG

Seq C2 exon

GTCAAGATGCAAAAAGGTGAGCGCCAGATGGCCAAAAGGTTCCTGGAGGAACGGAAGGAAGAGCTGGAGGAGGTGGCCCACGAACTGGCTGAGACTGAGCACGAGAACACGGTGTTGAGGCACAACATCGAGCGCATGAAGGAGGAGAAGGACTTCACCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136811_MULTIEX1-4/5=3-5

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

Show structural model

Features

Disorder rate (Iupred):

C1=0.954 A=0.640 C2=0.768

Domain overlap (PFAM):

C1:

PF041569=IncA=FE(11.4=100),PF134761=AAA_23=FE(13.8=100)

A:

PF041569=IncA=FE(29.0=100),PF104734=CENP-F_leu_zip=PU(24.0=43.9),PF0149614=V_ATPase_I=PU(22.2=49.1),PF041117=APG6=PU(27.2=64.9),PF134761=AAA_23=FE(35.2=100)

C2:

PF041569=IncA=FE(27.5=100),PF104734=CENP-F_leu_zip=FE(51.0=100),PF0149614=V_ATPase_I=FE(42.1=100),PF041117=APG6=FE(39.0=100),PF134761=AAA_23=FE(33.3=100)

Main Inclusion Isoform:

ENSP00000361882