GgaEX6015069 @ galGal3
Exon Skipping
Gene
ENSGALG00000004767 | ODF2
Description
NA
Coordinates
chr17:5739922-5742113:+
Coord C1 exon
chr17:5739922-5740047
Coord A exon
chr17:5740803-5740973
Coord C2 exon
chr17:5741947-5742113
Length
171 bp
Sequences
Splice sites
3' ss Seq
TATTTATTGTTTTTCACTAGGGA
3' ss Score
9.35
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CAAAAGCACAAACAGAAAATGAAAGGGAATACTGTGAACGTGCGCCGAGCAGTCCAGGTGAAAACAAAGGCCCCCTGGATGCCCCCAGGAAAAACATCTGTCCTTGATTCCACCTACAAATGGGAG
Seq A exon
GGACCAACTCACCGCCTGGAAATTACACCTCCAGAGTCCGAAAAGATGATGTCAGTATTGCGCCTGAGTGATCTCTCTACAGATGAGGAAGATGCAGTTTGCTGCAAAATGAATGAATACGAAAGGAAGATAGATAGCCTGATGAATGTGGTGGGAACACTAAAGAATGAG
Seq C2 exon
GCTAAGTTACAGAAACAGGAGCAAAGGCAGCAAATGACAAAACGTCTGCTTGAGGAGCAGAAAGAAGAGCTGAATGAGGTCACACAGGAGCTGGCAGAATCAGAACATGAGAACACGCTGCTCAGGCGCAATATTGAACGCATGAGGGAAGAGAAAGATCTGACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767-'8-6,'8-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=0.404 C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAATACTGTGAACGTGCG
R:
TGCGTTCAATATTGCGCCTGA
Band lengths:
245-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]