DreEX6083468 @ danRer10
Exon Skipping
Gene
ENSDARG00000028900 | odf2a
Description
outer dense fiber of sperm tails 2a [Source:ZFIN;Acc:ZDB-GENE-091117-46]
Coordinates
chr21:13033370-13035333:+
Coord C1 exon
chr21:13033370-13033474
Coord A exon
chr21:13033598-13033771
Coord C2 exon
chr21:13035146-13035333
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATTTGATTTTTAAATTTTAGGGA
3' ss Score
9.14
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTTAAGTCAAAAACTGGCTTGCATCCTACTGCTAAGGTGAAGACAAGAGTTCCATGGATTCCCCCTGGCAAGGTCTCAGCCCGAGAGACCTCATATAAGTGGGAT
Seq A exon
GGACCATCCCATCGTCTGGAAATAACGGCTCCACAGGAGCCTGAGCGTTCCCAGTCTCCTATGCGAATAGAAGATCTGTCCACCAATGAAGAAGAGGCACTGCATGGACGCATAAATCAGTACGAGAGGAAGATCGACAGTCTGATGACAGAGGTCAGCTCTCTGAAAAAGGAG
Seq C2 exon
GTAGAGCTTCGTAAGAAGGAGCAGCTGCTTGAGCGTCAGTCGGAGAGGTTGAGCGCATCCCAGCGTGTCATCGCTGAACAGGAAGAGGAGCTTGCAGAAGTCGCCCGAGAGCTGGAGGCCACAGAGCAGGAGAACTCACGTCTACGAGAGTCCATGGAGAAGATGCTGGCAGAGAATGATTTCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028900-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=0.724 C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGCTTGCATCCTACTGC
R:
TCCATGGACTCTCGTAGACGT
Band lengths:
252-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]