MmuEX6100122 @ mm10
Exon Skipping
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29893444-29902341:+
Coord C1 exon
chr2:29893444-29893569
Coord A exon
chr2:29901077-29901247
Coord C2 exon
chr2:29902181-29902341
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTTCACTCCTTTGCATCAGAAT
3' ss Score
6.75
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCATGTGGGATGCAAGTGGGAG
Seq A exon
AATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGAAAAGCTGGTCTCGGTGATGCGATTAAGTGACCTTTCTACAGAAGACGACGATTCAGGTCACTGTAAAATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAG
Seq C2 exon
GTCAAGATGCAGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAGGAAGAGCTGGAGGAGGTGGCACACGAGCTTGCAGAGACGGAGCATGAGAACACGGTGCTCAGACACAACATCGAGCGTATCAAGGAGGAGAAGGACTTCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-'21-31,'21-27,27-31
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.945 A=0.608 C2=0.725
Domain overlap (PFAM):
C1:
NO
A:
PF104734=CENP-F_leu_zip=PU(27.5=43.9)
C2:
PF104734=CENP-F_leu_zip=FE(58.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCGCGGAATGAAAGGGG
R:
GCTCGATGTTGTGTCTGAGCA
Band lengths:
252-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types