MmuEX6100122 @ mm9
Exon Skipping
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29748964-29757861:+
Coord C1 exon
chr2:29748964-29749089
Coord A exon
chr2:29756597-29756767
Coord C2 exon
chr2:29757701-29757861
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTTCACTCCTTTGCATCAGAAT
3' ss Score
6.75
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCATGTGGGATGCAAGTGGGAG
Seq A exon
AATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGAAAAGCTGGTCTCGGTGATGCGATTAAGTGACCTTTCTACAGAAGACGACGATTCAGGTCACTGTAAAATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAG
Seq C2 exon
GTCAAGATGCAGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAGGAAGAGCTGGAGGAGGTGGCACACGAGCTTGCAGAGACGGAGCATGAGAACACGGTGCTCAGACACAACATCGAGCGTATCAAGGAGGAGAAGGACTTCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-'10-26,'10-25,13-26=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.588 C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
PF104734=CENP-F_leu_zip=PU(26.9=43.1),PF0149614=V_ATPase_I=PU(17.3=46.6)
C2:
PF104734=CENP-F_leu_zip=FE(58.1=100),PF0149614=V_ATPase_I=FE(34.6=100),PF108053=DUF2730=PU(6.8=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSMUSP00000028128, ENSMUSP00000049272, ENSMUSP00000109384, ENSMUSP00000109385, ENSMUSP00000109386, ENSMUSP00000109387, ENSMUSP00000109388, ENSMUSP00000109388f6171A, ENSMUSP00000109391, ENSMUSP00000109392, ENSMUSP00000109393, ENSMUSP00000109395, ENSMUSP00000109396, ENSMUSP00000117628, ENSMUSP00000117887, ENSMUSP00000121207
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCGCGGAATGAAAGGGG
R:
GCTCGATGTTGTGTCTGAGCA
Band lengths:
252-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: