DreEX0058022 @ danRer10
Exon Skipping
Gene
ENSDARG00000006288 | prdm5
Description
PR domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040708-1]
Coordinates
chr23:1934808-1978148:-
Coord C1 exon
chr23:1977988-1978148
Coord A exon
chr23:1965038-1965131
Coord C2 exon
chr23:1934808-1934893
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCCGTCTCTTTTAGACC
3' ss Score
11.76
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
Exon sequences
Seq C1 exon
ATGAGAGGACGTTTAAGTGTGACCATTGTGACGCCACTTTCAAGCGTAAAGACACACTCAACGTGCACATTCAGGTGGTTCACGACGGACACAAGAAGTACAAGTGTGACCTGTGTGAGAAGGCCTTCGTCACGCCGTCTGTGCTCAAGAGCCACAAAAAG
Seq A exon
ACCCACACAGGAGAGAAGGAGAAGATCTGTCCATACTGCGGCCAGAAGTTTGCCAGCAACGGCACTTTGAGAGTTCACATCCGCAGCCACACGG
Seq C2 exon
GTGAGCGGCCGTATCAGTGTCCCTACTGTGACAAAGCCTTCAGCAAGAACGACGGGCTAAAAATGCACATTCGCACACACACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006288-'13-16,'13-14,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.062 C2=0.103
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1)
A:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTGCACATTCAGGTGGTT
R:
TGTGCATTTTTAGCCCGTCGT
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]