RnoEX0069360 @ rn6
Exon Skipping
Gene
ENSRNOG00000023679 | Prdm5
Description
PR/SET domain 5 [Source:RGD Symbol;Acc:1588700]
Coordinates
chr4:96764468-96787475:+
Coord C1 exon
chr4:96764468-96764628
Coord A exon
chr4:96767058-96767151
Coord C2 exon
chr4:96787390-96787475
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCATTTTTATTCCTGTTTAGACA
3' ss Score
7.58
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGAGAGGACTTTCAAGTGTCATCACTGCGACGCCACGTTTAAGAGGAAAGACACGTTAAATGTGCATGTCCAAGTGGTCCATGAAAGACACAAGAAGTACCGATGTGAGCTGTGCAGTAAGGCCTTTGTTACACCCTCAGTGCTTAGGAGTCACAAGAAG
Seq A exon
ACACACACAGGAGAAAAGGAGAAAGTCTGCCCATATTGTGGCCAGAAATTCGCCAGCAGTGGGACCCTGAGAGTTCACATCCGGAGCCACACAG
Seq C2 exon
GTGAGCGTCCCTATCAATGCCCATACTGTGAAAAAGGATTCAGTAAAAATGACGGACTGAAGATGCACATTCGTACTCACACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023679-'20-20,'20-18,21-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.031 C2=0.069
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1)
A:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATGTCCAAGTGGTCCAT
R:
TGGTGTGAGTACGAATGTGCA
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]