GgaEX6035032 @ galGal3
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
NA
Coordinates
chr4:55823113-55836963:+
Coord C1 exon
chr4:55823113-55823273
Coord A exon
chr4:55824278-55824371
Coord C2 exon
chr4:55836878-55836963
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTCACTTCATGTAGACT
3' ss Score
6.87
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAGAGGACCTTCAAGTGTGATCACTGTGATGCTACTTTCAAAAGAAAAGACACCTTAAACGTTCATATTCAAGTTGTACATGATGGACATAAGAAATATAAGTGTGATCTCTGTGACAAAGCTTTTGTGACACCCTCAGTCCTGAAAAGTCATAAAAAA
Seq A exon
ACTCACACAGGTGAAAAAGAAAAAATTTGCCCATATTGTGGACAGAAATTTGCAAGCAATGGAACACTGAGAGTTCATATTCGAAGCCATACAG
Seq C2 exon
GTGAGCGTCCTTACCAGTGTCCTTACTGTGACAAAGCTTTCAGCAAGAATGATGGACTGAAGATGCATATTCGCACCCACACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.062 C2=0.103
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1)
A:
PF134651=zf-H2C2_2=PD(69.2=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAGGACCTTCAAGTGTGA
R:
GACACTGGTAAGGACGCTCAC
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]