DreEX0065564 @ danRer10
Exon Skipping
Gene
ENSDARG00000022996 | setx
Description
senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
Coordinates
chr21:3791946-3793781:+
Coord C1 exon
chr21:3791946-3792169
Coord A exon
chr21:3793371-3793523
Coord C2 exon
chr21:3793625-3793781
Length
153 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTCCTCTATTCCAGGAA
3' ss Score
11.09
5' ss Seq
TCGGTACTT
5' ss Score
5.17
Exon sequences
Seq C1 exon
GTTCCAGGTCAACATTAAACCTGACAATTCAGACACGCGGTAATGTATCATCAGTGAATTCCCAACCTGTGCTCTGTGAAGTTGTTGGATCATTGATCAGCATATTTCGGGAGTTTCGTGCACTGTGTTTGCTGAGAAACGGACCAATGCTACGTCCTCTTCTTGCGCCCCATGTGTCTTTTTTCACACATTCTTTGGATGGACCATCAGACCTAGATGCACCA
Seq A exon
GAATTCAACAGGGACCAGGCAAGAGCAATAGCATGTGGGATCGCTATGATACACCGAAAACAGAAGACTCCAAAATTTCTCCTTATTCATGGTCCTCCTGGCACTGGGAAGAGTAAAACAATTGGTGGTCTGTTGTACAAACTTCTGTCTTCG
Seq C2 exon
GCTACTAATAGTTCTGCTACTGTGGGCAACCTTCACTCCAAATCTCGACGGACACGTGTTCTTCTCTGTGCACCTTCTAATGCTGCCATTGACAGTCTGATGAAGAAAGTCATCTTGATCTTTAAAGAGAAATGTCGAAACATTAACGCACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022996-'15-16,'15-15,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.059 C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(17.5=98.0)
C2:
PF130861=AAA_11=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACCTGTGCTCTGTGAAG
R:
GGCAGCATTAGAAGGTGCACA
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]