GgaEX0004780 @ galGal4
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr17:6500934-6502504:-
Coord C1 exon
chr17:6502376-6502504
Coord A exon
chr17:6501651-6501818
Coord C2 exon
chr17:6500934-6501087
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTATTTTCCTGTCCCTTCAGACG
3' ss Score
9.7
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GACAAAATGATCAGCATACTGTCTGTCATCTTTCTGTACAAACTCGAGGAAATTTGTCATTCTTCGTAAATAATGAAGTGAAGTGTATGGTGGTTGGCTCCTTAGTGCCCACACAACGGTCATTCAAAG
Seq A exon
ACGTTTTGTATGAATGAATACAACGAAGATCAAAAGAGAGCCATTGAAACAGCTTATGCCATGGTAAAGCAACATCCAGGGCTTGCCAAAATCTGTCTCATCCATGGACCACCTGGAACTGGGAAGTCCAAAACTATAGTTGGACTTTTGTCTCGTGTTTTGAGAGAG
Seq C2 exon
AACACCAGGAATGAGAAAACAAGTAAAAAAAATGCCAAGATAAAGCAAAACCGTTTTCTGGTTTGCGCACCATCCAATGCTGCAATTGATGAACTCATGAAAAAGATCATCATTGCATTTAAGGAGAAATGCCAAAACAGACAAGAGCCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661_MULTIEX2-4/5=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(17.5=89.3)
C2:
PF130861=AAA_11=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATCTTTCTGTACAAACTCGAGG
R:
AGGCTCTTGTCTGTTTTGGCA
Band lengths:
256-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]