HsaEX6063632 @ hg19
Exon Skipping
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:445]
Coordinates
chr9:135171259-135173699:-
Coord C1 exon
chr9:135173467-135173699
Coord A exon
chr9:135172274-135172441
Coord C2 exon
chr9:135171259-135171415
Length
168 bp
Sequences
Splice sites
3' ss Seq
AAAATGTGTTTTTTATATAGATT
3' ss Score
6.91
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGCGTAATGGGAAAACTGAGTGTTACCTTTCCATCCAGACTCAAGAGAACTTTCCGGCCAATTTAAACGAACTTGTGAATTGTATTGTAATCAGTTCTCTGGTAACTACACAAAGGAAGTTGAAAGCCATGTCTCTGTTGGGTAGTCGGAACCAACTGGCTAGAGCTGTTCTGAATCCAAACCCTATGGACTTCTGTACAAAAGATTTACTGACTACAACATCTGAGAGAATT
Seq A exon
ATTGCGTACTTAAGAGATTTCAATGAAGATCAAAAGAAAGCAATAGAAACTGCATATGCTATGGTGAAACACTCACCATCAGTTGCCAAAATCTGCTTGATTCATGGACCACCTGGAACAGGAAAATCAAAAACTATTGTTGGCCTCCTCTATCGTCTACTGACAGAG
Seq C2 exon
AACCAGAGGAAGGGGCATTCAGACGAAAACTCCAATGCCAAAATCAAACAAAACCGTGTCCTCGTGTGTGCACCTTCCAATGCAGCTGTTGATGAACTCATGAAAAAAATTATCCTTGAATTCAAAGAAAAATGTAAAGACAAGAAGAATCCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(17.5=89.3)
C2:
PF130861=AAA_11=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGAACTTTCCGGCCAA
R:
ACGAGGACACGGTTTTGTTTGA
Band lengths:
258-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)