GgaEX0004780 @ galGal3
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
NA
Coordinates
chr17:7132520-7134095:-
Coord C1 exon
chr17:7133866-7134095
Coord A exon
chr17:7133242-7133409
Coord C2 exon
chr17:7132520-7132678
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTATTTTCCTGTCCCTTCAGACG
3' ss Score
9.7
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GACAAAATGATCAGCATACTGTCTGTCATCTTTCTGTACAAACTCGAGGAAATTTGTCATTCTTCGTAAATAATGAAGTGAAGTGTATGGTGGTTGGCTCCTTAGTGCCCACACAACGGTCATTCAAAGGTCTGCTACTACTGAGCAGGAGTCCCCTGGCTAAACCCATCATAAATCCAAGTTACAGTGATTTCTGTCCAAGGGATTTGCCTGTATCTTCAGAAAGTGCT
Seq A exon
ACGTTTTGTATGAATGAATACAACGAAGATCAAAAGAGAGCCATTGAAACAGCTTATGCCATGGTAAAGCAACATCCAGGGCTTGCCAAAATCTGTCTCATCCATGGACCACCTGGAACTGGGAAGTCCAAAACTATAGTTGGACTTTTGTCTCGTGTTTTGAGAGAG
Seq C2 exon
AACACCAGGAATGAGAAAACAAGTAAAAAAAATGCCAAGATAAAGCAAAACCGTTTTCTGGTTTGCGCACCATCCAATGCTGCAATTGATGAACTCATGAAAAAGATCATCATTGCATTTAAGGAGAAATGCCAAAACAGACAAGAGCCTTTGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(17.5=89.3)
C2:
PF130861=AAA_11=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTGCTACTACTGAGCAGG
R:
AGGCTCTTGTCTGTTTTGGCA
Band lengths:
253-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]