MmuEX0041874 @ mm9
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:29012508-29014517:+
Coord C1 exon
chr2:29012508-29012740
Coord A exon
chr2:29013618-29013785
Coord C2 exon
chr2:29014361-29014517
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCATTACATCTTTTCTATAGGTT
3' ss Score
9.13
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
TGCGCAGTGGGAAAGCTGAGTGTTCATTATGCATACAGACACAAGATACCTTGCCAGCCAGTGTAAAAAATCTTACAAGATGCATTGTGATCAGTTCTCTGGTAACTACACAGAGGAAATTGAAAGCCATGTCTCTGTTGAGTAGTCGGAACCAGTTGGCCAGAGCTGTTCTAAATCCAAACCCCATGGACTTCTGTACCAAAGATCTACTAACTACAACTTCTGAAAGAATT
Seq A exon
GTTGCCTACTTAAAAGACTTTAATGAAGACCAAAAGAAAGCCATAGAAACTGCATATGCCATGGTGAAACACTCACCATCCGTTGCCAAAATCTGTCTGATTCATGGACCACCTGGAACAGGAAAATCCAAAACTATTGTTGGTCTCTTGTACCGCTTACTGACAGAG
Seq C2 exon
AACCAGAGGAAGGGCCATTCAGATGAAAATTTCAATGCCAAAATCAAACAAAATCGAGTCCTCGTGTGTGCACCTTCCAATGCGGCGGTTGATGAACTTATGAAAAAAATTATCCTCGAATTTAAAGAAAAATGTAAAGACAAGAAGAATCCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535-'26-24,'26-23,28-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(17.5=89.3)
C2:
PF130861=AAA_11=FE(18.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGGAAAGCTGAGTGTT
R:
TGAATGGCCCTTCCTCTGGTT
Band lengths:
251-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: