RnoEX0079936 @ rn6
Exon Skipping
Gene
ENSRNOG00000013491 | Setx
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7709065-7711127:+
Coord C1 exon
chr3:7709065-7709297
Coord A exon
chr3:7710205-7710372
Coord C2 exon
chr3:7710971-7711127
Length
168 bp
Sequences
Splice sites
3' ss Seq
TACACACATCTTTTCTATAGATT
3' ss Score
7.5
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGCGCAGTGGGAAAACCGAGTGCTCCTTATGCATCCAGACACAAGATAACATGCCAGCCAGTGTTAAAGAGCTTACAAAGTGTATCGTAATCAGTTCTCTGGTGACTACACAGAGGAAACTCAAAGCCATGTCTCTGTTGAGCGGTCGGAACCAGTTGGCCAGAGCCGTTCTGAATCCAAACCCCATGGACTTCTGTACCAAAGATCTACTGACTACAACTTCTGAAAGAATT
Seq A exon
ATTGCCTACTTAAAAGATTTTAATGAAGACCAGAAGAAAGCCATAGAAACTGCGTATGCCATGGTGAAGCACTCACCATCAGTTGCCAAAATCTGTCTGATTCATGGACCACCCGGAACAGGAAAATCAAAAACAATTGTAGGTCTCTTGTACCGCTTACTGACAGAG
Seq C2 exon
AGCCAGAGGAAGGGCCATTCAGATGAAAATTTCAACGCCAAAATCAAGCAAAACCGAGTCCTTGTGTGTGCACCTTCCAATGCAGCGGTTGATGAGCTTATGAAAAAAATTATCCTCGAATTCAAAGAAAAATGTAAAGACAAGAAGAATCCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491-'15-15,'15-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(17.5=89.3)
C2:
PF130861=AAA_11=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCCAGTGTTAAAGAGCT
R:
GCACACACAAGGACTCGGTTT
Band lengths:
252-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]