BtaEX6046963 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102398558-102403448:-
Coord C1 exon
chr11:102403216-102403448
Coord A exon
chr11:102402042-102402209
Coord C2 exon
chr11:102398558-102398714
Length
168 bp
Sequences
Splice sites
3' ss Seq
CACTAATGTCTTTCATATAGGTT
3' ss Score
8.23
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
TGCATAATGGGAAATTTGAGTGTTCGGTTTCCATCCAGACTCAAGATAATTTACCAGTCAATTTAAATGAACTCGTGAAATGCTTTGTAATCAGCTCTCTGGTGACTACACAAAGGAAGTTGAAAGCCATGTCTTTGCTGAGTGGTCGGAACCAACTGGCCAGAGCCATTCTGAATCCAAACCCCATGGACTTCTGTACAAAAGATTTACCAACTGCAACATCTGAGAGAATT
Seq A exon
GTTGCCTACTTAAAAGATTTCAATGAAGACCAGAAGAAAGCGATAGAAACTGCATGTGCCATGGTGAAACACTCCCCATCAGTTGCCAAGATCTGTCTGATTCATGGACCACCTGGAACAGGAAAATCAAAAACCATTGTTGGCATCCTGTACCGCCTGCTGACAGAG
Seq C2 exon
AACCAGAGGAGGGGGTATTCAGATGAAAACTCCAACGCCAAAATCAAGCAAAACCGTGTCCTCGTATGTGCTCCTTCCAATGCAGCTGTTGATGAACTTATGAAAAAAATTATCCTTGAATTCAAAGAAAAGTGTAAAGACAAGAAGAATCCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822-'17-18,'17-16,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(17.5=89.3)
C2:
PF130861=AAA_11=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGTTCGGTTTCCATCCA
R:
TGGCGTTGGAGTTTTCATCTGA
Band lengths:
257-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]