DreEX0066254 @ danRer10
Exon Skipping
Gene
ENSDARG00000063580 | si:ch1073-219n12.1
Description
si:ch1073-219n12.1 [Source:ZFIN;Acc:ZDB-GENE-091204-412]
Coordinates
chr9:3093019-3097433:+
Coord C1 exon
chr9:3093019-3093177
Coord A exon
chr9:3094156-3094209
Coord C2 exon
chr9:3097204-3097433
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATATTGTGCTTTAATTTCAGCTC
3' ss Score
7.95
5' ss Seq
AGAGTATGA
5' ss Score
1.79
Exon sequences
Seq C1 exon
GACGAGCACTACGAGGACGAGGAGGAAGGGGGCGAGGATGGCATCCTGGGTTCCAGCTTCTGCGGTAGGAATGTGGAAGTGTACGATCTGCCCGAAAGTGAGGACATGTTCCTGCCCTCCAACATGGACACCACGCAGCTAACGTTCAGGTTTAAAGAG
Seq A exon
CTCCAGATAAAGCACACCATCGCAGAAGCTGAAGTGGATGAGCTGAAAGAGAGA
Seq C2 exon
TTGCGGGAGTCCTCAGAGGAGCGTGCGGCGTGGGAGGCCAGAGAAGCTCAGTTAGAGAGGAGCGTTCAGGAGAACTCGGAGAGAATCGCTCAGATGGAGAAGAACTGGCTGGAAGCTCAGGCGCTTTGCAAAAGCATCAACGAACAGCTCAATGACACGCAGAGCCAGTATGAAGCGCTGGACAAAAAATACAGCAAAGCCAAGAAACTGCTCAAGGACTATCAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063580-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.389 C2=0.458
Domain overlap (PFAM):
C1:
PF082026=MIS13=FE(28.9=100),PF149711=DUF4510=PU(8.4=15.1)
A:
PF082026=MIS13=FE(9.4=100),PF149711=DUF4510=FE(17.9=100)
C2:
PF082026=MIS13=PD(41.1=96.1),PF149711=DUF4510=PD(70.5=87.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAGCTAACGTTCAGGTTT
R:
GCTTCCAGCCAGTTCTTCTCC
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]