GgaEX1002896 @ galGal3
Exon Skipping
Gene
ENSGALG00000013233 | LOC395762
Description
NA
Coordinates
chr7:19045738-19049542:+
Coord C1 exon
chr7:19045738-19045881
Coord A exon
chr7:19047365-19047418
Coord C2 exon
chr7:19049313-19049542
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTATTTGTTTCAGCTG
3' ss Score
9.7
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GACGATGAGTATGATGATGATGATGATACATATGAATCACATTTACATGAAAAATCTGTGGAAGTTTTTGATCTTCCTGAAAATGAGGATATCAGTTTACCACTGGATATGGATTCAGCACAATCTCTTCTTAAATTTAAGGAG
Seq A exon
CTGCAGTTAAAACATGCAGTAACAGTAGCTGAAGTGAATCAACTGAAGGAGAAA
Seq C2 exon
TTAGAAGTTGTTGAAGCAGAAAAAAATGAATGGAAATTAAATAGAGCCCAACTTCAGCAAAACTTAGAGGAAAGCAAAGAAAAAATTAAGAAGTTGGAGACCTACTGGTTAGAAGCACAGAGTTTGTGCAAAACAGTAAATGAGCACCTTAAAGAAACTCAAGAACAATGTGATGCCCTTGAAAAGAAGTACAACAAGGCCAAGAAATTGCTCAAAGATTACCAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013233-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGAAAATGAGGATATCAGT
R:
AGTTTTGCTGAAGTTGGGCTCT
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]