DreEX0067383 @ danRer10
Exon Skipping
Gene
ENSDARG00000052917 | si:ch211-202f3.3
Description
si:ch211-202f3.3 [Source:ZFIN;Acc:ZDB-GENE-080917-19]
Coordinates
chr17:45601801-45602956:+
Coord C1 exon
chr17:45601801-45601886
Coord A exon
chr17:45602382-45602453
Coord C2 exon
chr17:45602796-45602956
Length
72 bp
Sequences
Splice sites
3' ss Seq
TATTTACATCAATCCTCCAGTTC
3' ss Score
4.65
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTCATGAGTGGTAGAAATCCTGTTCAGCTGGTGAGATTGTTCAACCCATGGGGAGACAGTGAGTGGAATGGAGACTGGAGTGACAA
Seq A exon
TTCACCTTTATGGAACACGGTCGATGATGAGGACCGCAAACAGCTTCTCGTATCTGATAATGGAGAGTTCTG
Seq C2 exon
GATGTCAATGAAAGATTTCCTTAGAACATTTGACAACATGGACATCTGTTGTAACTGTCCTGATTTTCTGGAAGGAAAGTCTGCATGCAAGTGGACCTCCAAGTCCCACAACGGCAGCTGGGTTCCTGGAAGTACAGCTGGAGGCTGCATGAACCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052917-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.055
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.5=100)
A:
PF0064816=Peptidase_C2=FE(8.2=100)
C2:
PF0064816=Peptidase_C2=PD(6.5=34.5),PF0106717=Calpain_III=PU(16.0=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGGAGACAGTGAGTGGA
R:
TGTACTTCCAGGAACCCAGCT
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]