DreEX0068382 @ danRer10
Exon Skipping
Gene
ENSDARG00000030967 | si:ch211-51a6.2
Description
si:ch211-51a6.2 [Source:ZFIN;Acc:ZDB-GENE-090313-118]
Coordinates
chr13:21679836-21684918:+
Coord C1 exon
chr13:21679836-21679977
Coord A exon
chr13:21680089-21680367
Coord C2 exon
chr13:21684796-21684918
Length
279 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCTTTTTAATTCAGTGG
3' ss Score
7.39
5' ss Seq
ACGGTCAGG
5' ss Score
4.63
Exon sequences
Seq C1 exon
GTCCGCTGGTGAGGCTGGTGGACGGAGAGAGCCGTAAGGAGGGCCGTGTGGAGGTGTTCATTAACGCTCAGTGGGGCAGTGTGTGTGACGACGGTTGGAATGACATCAATGCTCAAGTGGTCTGCAGACAGCTAGGATTTGT
Seq A exon
TGGGGTCTCGAAGGCTCGATCCATGGCTTATTTTGGGGAGGGCCAGGGATCCATCCATCTGGATAATGTGAAGTGTGTTGGGACAGAAGTTTCATTGGGCGAGTGTTCAGCTGTCGGGTCGGACGCTCATGATTGCAGGCACAGTGAGGACGCAGGGGTCATTTGTGACTATGTTACTGAACCCGTAAAAATGAATAGTTTTGGCAAACACGAGTGTGGGTTGAGACCAAACACACAGAGACGCAGGAGGAGGATCATCGGTGGAGACAAGTCTCTACG
Seq C2 exon
GGGGGACTGGCCGTGGCAAGTGTCTCTTTGGCTCAGGTCTCAATCAAAAGGCTCACATCCTCTCTGTGGGGCAACTCTCATCAACTCCTGTTGGGTCATTACTGCTGCTCACTGCTTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030967-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(57.1=59.6),PF0008921=Trypsin=PU(3.3=8.5)
C2:
PF0008921=Trypsin=FE(17.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGAGGCTGGTGGA
R:
CAGTGAGCAGCAGTAATGACCC
Band lengths:
252-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]