DreEX0073066 @ danRer10
Exon Skipping
Gene
ENSDARG00000044808 | slc4a4b
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4b [Source:ZFIN;Acc:ZDB-GENE-091030-1]
Coordinates
chr21:5887439-5929894:+
Coord C1 exon
chr21:5887439-5887838
Coord A exon
chr21:5919726-5919796
Coord C2 exon
chr21:5929721-5929894
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTTTCTATTTCAGAAT
3' ss Score
12.94
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGTCTGTCTGTTCATCCTCCCACTGCTGCGTCACGCTGGAGGAGGGCGAGATCTTTAAATATGGATCAAGACTTAAGACGAGCCTGCGGAGCGCGACGCCACGCGTTTCTCGACCGGACAGAGAGAGCTCCTGATCCCGCTGCGGAATGACTGCTGGACTGCCCGAATGTACTGTAGTTTGTAGAAGCAGCAGCGGTGAAACATCTCTGGCTCCAGATAAACTCAACTGAAAGCGTTTCTGCTTTACGCATCCAGACGCGCTTGAACTTGGAGCGAAATCGCACTTCTTTAAGAGAGAGTTTCTCGCTCGGACGCACTTTTTAATCCAGAGTTCCATAAGAAGAAAGTGGTTCTCTTGGAGAAGAGGACGCCAATTGTCAACATGAGCGACAAAAACAA
Seq A exon
AATGGAGGATGAAGCTGTAGTGGACAGAGGAGCATCGTACATCAAAAACGTGTGTGACGAGGAGGTCGAAG
Seq C2 exon
GTCATCACACAGTCTACATTGGTGTTAATGTGCCTAAAAGTTACCGGCGGCGCCGCCGACACAGACGACGATCCAGTCACAGAGAGAGACGGGAACGAGTGACGGAGAACGTGAGCGACAAATCAGACACCGAGAACGCAGACGACTCCTCGTCCAGCATCCTCAAACCACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044808-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.400 C2=0.678
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGAGAAGAGGACGCCAA
R:
CGGTGTCTGATTTGTCGCTCA
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]