DreEX6018601 @ danRer10
Exon Skipping
Gene
ENSDARG00000104225 | ndel1b
Description
nudE neurodevelopment protein 1-like 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5889]
Coordinates
chr3:44443653-44448442:-
Coord C1 exon
chr3:44448306-44448442
Coord A exon
chr3:44446264-44446437
Coord C2 exon
chr3:44443653-44443747
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGATGTACACGTTCTTGTAGACC
3' ss Score
7
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGCCACCATCACGTCTCTGGAGGACTTTGAGCAGAGGCTGAACCAGGCGATTGAGAGGAACGCTTTCCTGGAAAGCGAACTGGACGAGAAGGAGTCTCTGCTGGTCTCAGTGCAGAGGCTTAAAGATGAAGCTAGAG
Seq A exon
ACCTGAGGCAGGAGTTGGCTGTACGAGAGAGGACGTCAGATGTGACCAGGATGTCGGCCCCCAGTTCTCCTACTTTAGATATTGATAAGACAGACTCTGCTGTGCAGGCCTCGCTGTCTCTCCCAGCTACACCTGTGGGGAAGACCATGGAGCATCCTTTCATTGGCACAAAAG
Seq C2 exon
CATTAACCAATGGCTGTGGAAATGGCTCCCCTCTCACACCATCTGCACGGATCTCAGCTCTTAACATCGTTGGTGACCTTCTGCGGAAAGTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104225-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.729 C2=0.250
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PU(20.4=87.2)
A:
PF048808=NUDE_C=FE(28.9=100)
C2:
PF048808=NUDE_C=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCATCACGTCTCTGGAG
R:
CTTTCCGCAGAAGGTCACCAA
Band lengths:
226-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]