DreEX6025914 @ danRer10
Exon Skipping
Gene
ENSDARG00000075812 | kcnt2
Description
potassium channel, subfamily T, member 2 [Source:ZFIN;Acc:ZDB-GENE-130530-783]
Coordinates
chr2:12263143-12267341:-
Coord C1 exon
chr2:12267233-12267341
Coord A exon
chr2:12263456-12263605
Coord C2 exon
chr2:12263143-12263345
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTACGTGTATCTTTTGCAGAGA
3' ss Score
9.05
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ATCATATTGTTTGTGAGGAAGAGTTTAAATTTGCCATGCTGGCCATGAACTGCATCTGTCCTGCAACATCTACATTCATCACCCTTCTGGTGCACACCTCACAAGGCCT
Seq A exon
AGAGGGCCAGCACTCTCCTGAGGACTGGCACAGAATTTATGGCAAATGCTCAGGAAATGAAGTGTACAGTATAGTTCTGAACAAAAGCATCTTCTTTTCTGAGTATGAAGGAAACAACTTTGCTTATGCATCATTTAACGCATATAATAA
Seq C2 exon
GTATGGCATCTGTCTCATTGGAGTCTGTCCTGAGGACACTAAGAGCATTCTGCTGAATCCTGGTGCTCAGTATACCATGAATGCCATGGACACGTGCTTCTATATCAGTCTCACCAAGGAGGAAAACTCCTATGTTAAGCAGAGAGAGTGTGGAAACAACAGCAAGACTCAACCGCCAATGGGGAGTGCCATTACAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075812-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.316
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(34.0=100)
A:
PF0349313=BK_channel_a=FE(46.2=100)
C2:
PF0349313=BK_channel_a=PD(8.5=13.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCATGAACTGCATCTGT
R:
ATTGGCGGTTGAGTCTTGCTG
Band lengths:
251-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]