DreEX6041418 @ danRer10
Exon Skipping
Gene
ENSDARG00000000189 | sema6e
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
Coordinates
chr16:30283855-30291533:+
Coord C1 exon
chr16:30283855-30284010
Coord A exon
chr16:30284254-30284427
Coord C2 exon
chr16:30291396-30291533
Length
174 bp
Sequences
Splice sites
3' ss Seq
GGCTTATGTTCCTCATGTAGGTT
3' ss Score
8.65
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCCAGGGTCGTGTGCTGGTGATGGCCCTGCTGCTGGTTACAAGTCCTCCACAAATTTCCCTGATGAGACTCTTACCTTCATTAAGTCTTATCCACTAATGGACGAGGCTGTGCCGTCTGTCAACAACCGACCCTGCTTCACACGAACCACCAGCAG
Seq A exon
GTTCAAGCTGACCCAGATTGCAGTGGACACGGCAGCTGGCCCATATAAGAACTACACTGTCGTGTTTCTGGGGTCAGAAAATGGACATGTCCTGAAGGTTTTAGCTAGCATGCATCCAAACTCCTCGTACAGCACTCAGGTTTTGGAGGACATCGATGTTTACAACCCTAACAA
Seq C2 exon
ATGTAATGTGCGTGGGGAGGACCGGAGGATTCTGGGATTGGAGCTGGATAAAGACCATCATGCCCTGTTTGTGGCCTTTACAGGTTGCGTAATCCGTGTTCCACTCAGTCGCTGTTCGGATTATGGAATCTGCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000189-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.4=100)
A:
PF0140314=Sema=FE(13.8=100)
C2:
PF0140314=Sema=PD(1.2=10.6),PF0143720=PSI=PU(13.8=19.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGTTACAAGTCCTCC
R:
AATCCGAACAGCGACTGAGTG
Band lengths:
250-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]