DreEX6083198 @ danRer10
Exon Skipping
Gene
ENSDARG00000103699 | ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
Coordinates
chr21:9367881-9375274:-
Coord C1 exon
chr21:9375112-9375274
Coord A exon
chr21:9373251-9373617
Coord C2 exon
chr21:9367881-9367978
Length
367 bp
Sequences
Splice sites
3' ss Seq
CTGTCACTTCTTCCTCTCAGAGA
3' ss Score
9.03
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
AAAAAGAAGATTTGCTTGCAGAACACTTCAGACGGGATCAAACATCTGTTTCAGACGGACAGTCAGAAGACCTGCCAGTATCTACTGCAGCTGTGCTCGGCTCAGTACAAGTTCCACCTGCACATGAAAGCCAGACAGAACAACCAGGAACTGCAGGAGCTGG
Seq A exon
AGAACTCTCCGCTGAGCAGTCTGCAGTACTCTGATGGGATGGGTGCAGTTAGTCTGTCCCCCAGCTCTGAGCCTGAACTCTACAAGAGGATGTCCTACTCAGAGATGTCCCTCAGTAAGAGCTCATCCAGTCGGGTCTCTGTCCCATCTGAACCGCCCTATCCAGGGTTCAGCAGCAGCTCCAACCCCAGGATGAAGAGCCGTTCCCATCATAACCTGGGCCAGCTGCCAGAGTCGCCAGAGCACAGGATGGTGCCATTCAGTAGCCAATCACAGAGCAGCATGGCCCGATCACAAGTGCTCGCGTCATCACATCAGCGTGCAAATTCAGACACGGGATCCATCGCTGTGGCCAGACAACAAGAAAG
Seq C2 exon
TTTGTCGGTGGATGACAGCCCTCGCTGGAGCCCTAAAAGCCTAAAGAAAGAGTCAGACTCTTCATCCTGCGAGGACACGGGACAGGCATATGTCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103699-'20-20,'20-18,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.822 C2=0.947
Domain overlap (PFAM):
C1:
PF093805=FERM_C=PD(51.6=85.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATTTGCTTGCAGAACACT
R:
TACGACATATGCCTGTCCCGT
Band lengths:
256-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]