GgaEX6034647 @ galGal4
Exon Skipping
Gene
ENSGALG00000011078 | PTPN13
Description
protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) [Source:HGNC Symbol;Acc:HGNC:9646]
Coordinates
chr4:45253331-45256783:-
Coord C1 exon
chr4:45256621-45256783
Coord A exon
chr4:45253601-45254024
Coord C2 exon
chr4:45253331-45253428
Length
424 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTAAAAATTTCACAGAGC
3' ss Score
7.08
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
AAGAAGAAAATAACGTTGCAAAACACATCGGATGGTATCAAGCATTCCTTTCAGACTGACAACAGTAAAACCTGTCAGTACCTTTTGCATCTCTGCTCTTCCCAACATAAGTTCCAGCTGCAGATGAGAACCAGGCAGAGCAACCAGGACACTCAGGACATTG
Seq A exon
AGCGAGCTTCCTTTAGGAGCCTGAACATCCATGCGGAGTCAGTGAAAGGCTTTGGCATGGGGCGGGCCATCAGCACGGGCAGCCTGGCCAGCAGCACACTGAACCGCCTTGCAGTGCGCCCTCTATCTGTGCAGGCGGAGATCCTGAAGCGACTATCCTGCTCTGAGCTCTCGCTCTTCCAACCACCCCCTGGCTCTTCAAAGGACAAGAATGTAAAGACTTCGTGGGAGGAAAGACCCAGGGTGATTAGCAAATCGTTCCATGATCTGAGCCAGAGCCATATCTCAGTTTACCCTCCGAGGAAGAATGTTATCTCAGCTTTGGACTCTTCCTCCCAGAAAATAGAGGACTTAATGGGAAGGGTCTTTCAGCGAATGCCAAAATTTGATACTGGATCAGCAGCAGGAGCATTAAAACTGAACAA
Seq C2 exon
TTCAAAATCTCATGCAGGTTTAAGTAGAAGTCCTGAAAGAAAGAAAAATGAATCGGACTCATCATCCATGGAAGATACCGGGCAAGCCTATGTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078-'30-31,'30-29,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.239 C2=0.971
Domain overlap (PFAM):
C1:
PF093805=FERM_C=PD(51.1=83.6)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATAACGTTGCAAAACACATCGGA
R:
CTACAACATAGGCTTGCCCGG
Band lengths:
254-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]