GgaEX6034647 @ galGal3
Exon Skipping
Gene
ENSGALG00000011078 | PTPN13
Description
NA
Coordinates
chr4:47286753-47290205:-
Coord C1 exon
chr4:47290043-47290205
Coord A exon
chr4:47287023-47287446
Coord C2 exon
chr4:47286753-47286850
Length
424 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTAAAAATTTCACAGAGC
3' ss Score
7.08
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
AAGAAGAAAATAACGTTGCAAAACACATCGGATGGTATCAAGCATTCCTTTCAGACTGACAACAGTAAAACCTGTCAGTACCTTTTGCATCTCTGCTCTTCCCAACATAAGTTCCAGCTGCAGATGAGAACCAGGCAGAGCAACCAGGACACTCAGGACATTG
Seq A exon
AGCGAGCTTCCTTTAGGAGCCTGAACATCCATGCGGAGTCAGTGAAAGGCTTTGGCATGGGGCGGGCCATCAGCACGGGCAGCCTGGCCAGCAGCACACTGAACCGCCTTGCAGTGCGCCCTCTATCTGTGCAGGCGGAGATCCTGAAGCGACTATCCTGCTCTGAGCTCTCGCTCTTCCAACCACCCCCTGGCTCTTCAAAGGACAAGAATGTAAAGACTTCGTGGGAGGAAAGACCCAGGGTGATTAGCAAATCGTTCCATGATCTGAGCCAGAGCCATATCTCAGTTTACCCTCCGAGGAAGAATGTTATCTCAGCTTTGGACTCTTCCTCCCAGAAAATAGAGGACTTAATGGGAAGGGTCTTTCAGCGAATGCCAAAATTTGATACTGGATCAGCAGCAGGAGCATTAAAACTGAACAA
Seq C2 exon
TTCAAAATCTCATGCAGGTTTAAGTAGAAGTCCTGAAAGAAAGAAAAATGAATCGGACTCATCATCCATGGAAGATACCGGGCAAGCCTATGTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078-'18-23,'18-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.239 C2=0.971
Domain overlap (PFAM):
C1:
PF093805=FERM_C=PD(51.1=83.6)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATAACGTTGCAAAACACATCGGA
R:
CTACAACATAGGCTTGCCCGG
Band lengths:
254-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]