RnoEX0071155 @ rn6
Exon Skipping
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7746818-7752042:-
Coord C1 exon
chr14:7751880-7752042
Coord A exon
chr14:7747057-7747471
Coord C2 exon
chr14:7746818-7746912
Length
415 bp
Sequences
Splice sites
3' ss Seq
GAAATCCTATTTCCTTGTAGAGA
3' ss Score
6.79
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
Exon sequences
Seq C1 exon
AAAAAGAAAATCACGTTACAAAATACATCAGACGGAATCAAGCACGCATTCCAGACAGACAGCAGCAAGGCCTGCCAATACCTGCTGCAGCTGTGCTCCTCCCAGCATAAATTCCAGCTACAGATGAGGGCGAGACAGAGCAACCAGGATGCCCAAGACTTAG
Seq A exon
AGAGAGCTTCGTTTAGGAGCCTGAACCTGCAAGCAGAATCTGTTAGAGGATTTAATGTGGGCCGCGCCATCAGCACTGGCAGTCTGGCCAGCAGCACCTTCAACAAACTTGCCGTCCGACCCCTGTCAGTGCAAGCCGAGATTCTGAAGAGGCTGTCCTGCTCAGAGTGGTCGCTTTACCAGCCACTGCAAAACAGTTCAAAAGAGAAGAATGACAAAGCGTCCTGGGAGGAAAAGCCTAGAGGGATGAGCAAATCGTATCACGATCTCAGTCAGGCCTCTCTCTGTCCTCATCGGAAACAGGTCATTAACATGGAGTCCCTACCACAAGCCTTTGCGGAGCTGGTGGGAAAACCATTGTACCCGATGGCAAGATCTGACACAGAGTCACTGGCAGGACTCCCCCAGCTTAATAA
Seq C2 exon
TTCAAAGTCTGTTGCCAGTTTAAATAGAAGCCCCGAAAGGAGGAGCCATGAATCAGACTCGTCCGTTGAAGACCCTGGCCAAGCATATGTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061-'28-29,'28-27,30-29
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.291 C2=1.000
Domain overlap (PFAM):
C1:
PF093805=FERM_C=PD(51.1=83.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGTTACAAAATACATCAGACGGA
R:
ACAACATATGCTTGGCCAGGG
Band lengths:
246-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]