RnoEX0071170 @ rn6
Exon Skipping
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7739130-7752042:-
Coord C1 exon
chr14:7751880-7752042
Coord A exon
chr14:7746818-7746912
Coord C2 exon
chr14:7739130-7739219
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCTTCCCTCTGTAGTTC
3' ss Score
10.49
5' ss Seq
TAGGTCAGC
5' ss Score
4.81
Exon sequences
Seq C1 exon
AAAAAGAAAATCACGTTACAAAATACATCAGACGGAATCAAGCACGCATTCCAGACAGACAGCAGCAAGGCCTGCCAATACCTGCTGCAGCTGTGCTCCTCCCAGCATAAATTCCAGCTACAGATGAGGGCGAGACAGAGCAACCAGGATGCCCAAGACTTAG
Seq A exon
TTCAAAGTCTGTTGCCAGTTTAAATAGAAGCCCCGAAAGGAGGAGCCATGAATCAGACTCGTCCGTTGAAGACCCTGGCCAAGCATATGTTGTAG
Seq C2 exon
ATTCATTGCACAAAAGATGGAGCACTGTCTCTTCACCAGAAAGGGAGATCACACTGGTGAACCTGAAGAAAGACTTGAAGCATGGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061_MULTIEX2-3/5=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=1.000 C2=0.387
Domain overlap (PFAM):
C1:
PF093805=FERM_C=PD(51.1=83.6)
A:
NO
C2:
PF0059519=PDZ=PU(14.3=38.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGAATCAAGCACGCATT
R:
TGGTGAAGAGACAGTGCTCCA
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]