MmuEX0037798 @ mm10
Exon Skipping
Gene
ENSMUSG00000034573 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103540972-103543464:+
Coord C1 exon
chr5:103540972-103541386
Coord A exon
chr5:103541522-103541616
Coord C2 exon
chr5:103543408-103543464
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCTTCCCTCTGTAGTTC
3' ss Score
10.49
5' ss Seq
TAGGTCAGC
5' ss Score
4.81
Exon sequences
Seq C1 exon
AGAGAGCTTCGTTTAGGAGCCTGAACCTGCAAGCAGAGTCTGTTAGAGGATTTAATATGGGCCGCGCAATCAGCACGGGCAGTCTGGCCAGCAGCACCATCAACAAACTTGCCGTCCGACCCCTGTCAGTTCAAGCTGAGATTCTGAAGAGGCTGTCCAGCTCAGAGTGGTCGCTTTACCAGCCCCTGCAGAACAGTTCAAAAGAGAAGACTGACAAAGCTTCCTGGGAGGAAAAGCCTAGAGGGATGAGCAAATCGTATCACGATCTCAGTCAGGCCTCTCTCTGTCCTCACCGGAAACAGGTCATTAACATGGAGGCCCTCCCACAAGCCTTTGCGGAGCTGGTGGGAAAACCCTTGTACCCGATGGCAAGATCTGACACAGAGTCACTGGCAGGACTCCCAAAGCTTGATAA
Seq A exon
TTCAAAGTCTGTTGCCAGTTTAAATAGAAGCCCCGAAAGGAGGAACCATGAATCAGACTCATCCACTGAAGACCCTGGCCAAGCATATGTTGTAG
Seq C2 exon
GAATGAGTTTGCCTAGCTCTGGAAAATCTTCATCCCAAGTCCCCTTTAAAGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573-'30-32,'30-31,33-32
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=1.000 C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATCTCAGTCAGGCCTCTC
R:
TTCCAGAGCTAGGCAAACTCA
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types