BtaEX0028969 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014947 | PTPN13
Description
Bos taurus protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) (PTPN13), mRNA. [Source:RefSeq mRNA;Acc:NM_174590]
Coordinates
chr6:103474723-103477024:+
Coord C1 exon
chr6:103474723-103475140
Coord A exon
chr6:103475280-103475377
Coord C2 exon
chr6:103476968-103477024
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTTTCCCTCTTTAGTTC
3' ss Score
10.85
5' ss Seq
TAGGTCAGC
5' ss Score
4.81
Exon sequences
Seq C1 exon
AGAGAGCTTCGTTTAGGAGCCTGAACTTCCAAGCAGAGTCCGTTAGAGGATTTAATATGGGACGAGCAGTCAGCACTGGTAGTCTGGCCAGCAGCACCCTGAACAAACTTGCCGTTCGACCTCTGTCGGTTCAAGCTGAGATTCTGAAGAGGCTCTCCTGCTCAGAGCTGTCGCTTTGCCAGCCATTGCAAAACAGTGCAAAAGAGAAGAATGGCAAAACTGCATGGGAGGAAAAGCCTAGAGGGATGAGTAAATCATACCACGATCTCAGTCAGGCCTGTCTCTACCCTCACCGGAAAAATGTCAATGTTAACATGGAGCCCCCACCACAAACCATTGCGGAGTTGGTAGGAAAAACGCTTCACCAGATGGCAAGATCTGATACAGAATCTCTGGCAGGAGTCACAAAACTCAATAA
Seq A exon
TTCAAAGTCTGTTGCGAGTTTAAATAGAAGTCCTGAAAGGAGGAAACATGAATCAGACTCCTCATCCTTTGAAGACCTTGGTCAAGCATATGTTCTAG
Seq C2 exon
GAATGACTTTGCATAGTTCTGGAAATTCTTCATCCCAAGTACCCTTAAAAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014947-'21-28,'21-27,22-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.618 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCACCGGAAAAATGTCA
R:
GGGTACTTGGGATGAAGAATTTCCA
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development