DreEX6083199 @ danRer10
Exon Skipping
Gene
ENSDARG00000103699 | ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
Coordinates
chr21:9365555-9373617:-
Coord C1 exon
chr21:9373251-9373617
Coord A exon
chr21:9367881-9367978
Coord C2 exon
chr21:9365555-9365614
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTCTCCTGCAGTTT
3' ss Score
10.2
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
AGAACTCTCCGCTGAGCAGTCTGCAGTACTCTGATGGGATGGGTGCAGTTAGTCTGTCCCCCAGCTCTGAGCCTGAACTCTACAAGAGGATGTCCTACTCAGAGATGTCCCTCAGTAAGAGCTCATCCAGTCGGGTCTCTGTCCCATCTGAACCGCCCTATCCAGGGTTCAGCAGCAGCTCCAACCCCAGGATGAAGAGCCGTTCCCATCATAACCTGGGCCAGCTGCCAGAGTCGCCAGAGCACAGGATGGTGCCATTCAGTAGCCAATCACAGAGCAGCATGGCCCGATCACAAGTGCTCGCGTCATCACATCAGCGTGCAAATTCAGACACGGGATCCATCGCTGTGGCCAGACAACAAGAAAG
Seq A exon
TTTGTCGGTGGATGACAGCCCTCGCTGGAGCCCTAAAAGCCTAAAGAAAGAGTCAGACTCTTCATCCTGCGAGGACACGGGACAGGCATATGTCGTAG
Seq C2 exon
GCGTGAGCATGCACAGCTCTGGAGTTCCCTCCACTCCTGCCTCCTCCATAGGAATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103699-'21-21,'21-20,22-21=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=0.947 C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGTGCCATTCAGTAGCC
R:
CTATGGAGGAGGCAGGAGTGG
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]