GgaEX1046991 @ galGal4
Exon Skipping
Gene
ENSGALG00000011078 | PTPN13
Description
protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) [Source:HGNC Symbol;Acc:HGNC:9646]
Coordinates
chr4:45251831-45254024:-
Coord C1 exon
chr4:45253601-45254024
Coord A exon
chr4:45253331-45253428
Coord C2 exon
chr4:45251831-45251887
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTTCTCCCCTTTAAGTTC
3' ss Score
9.95
5' ss Seq
TAGGTCAGC
5' ss Score
4.81
Exon sequences
Seq C1 exon
AGCGAGCTTCCTTTAGGAGCCTGAACATCCATGCGGAGTCAGTGAAAGGCTTTGGCATGGGGCGGGCCATCAGCACGGGCAGCCTGGCCAGCAGCACACTGAACCGCCTTGCAGTGCGCCCTCTATCTGTGCAGGCGGAGATCCTGAAGCGACTATCCTGCTCTGAGCTCTCGCTCTTCCAACCACCCCCTGGCTCTTCAAAGGACAAGAATGTAAAGACTTCGTGGGAGGAAAGACCCAGGGTGATTAGCAAATCGTTCCATGATCTGAGCCAGAGCCATATCTCAGTTTACCCTCCGAGGAAGAATGTTATCTCAGCTTTGGACTCTTCCTCCCAGAAAATAGAGGACTTAATGGGAAGGGTCTTTCAGCGAATGCCAAAATTTGATACTGGATCAGCAGCAGGAGCATTAAAACTGAACAA
Seq A exon
TTCAAAATCTCATGCAGGTTTAAGTAGAAGTCCTGAAAGAAAGAAAAATGAATCGGACTCATCATCCATGGAAGATACCGGGCAAGCCTATGTTGTAG
Seq C2 exon
GTGTTAGCATGAGTAGCTCTGGAAATCTTCCATCATCAACACCATTAAAAGAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078_CASSETTE5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.971 C2=0.900
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCAGAGCCATATCTCAGT
R:
TCCAGAGCTACTCATGCTAACAC
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]