MmuEX0037797 @ mm10
Exon Skipping
Gene
ENSMUSG00000034573 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103536714-103550314:+
Coord C1 exon
chr5:103536714-103536876
Coord A exon
chr5:103540972-103541386
Coord C2 exon
chr5:103550225-103550314
Length
415 bp
Sequences
Splice sites
3' ss Seq
GCAATCCTATTTCCTTGTAGAGA
3' ss Score
7.03
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
Exon sequences
Seq C1 exon
AAGAAGAAAATCACATTACAGAACACGTCAGATGGAATCAAGCATGCGTTCCAGACGGACAGCAGCAAGGCATGCCAGTACCTGCTGCACCTGTGCTCCTCCCAGCACAAGTTCCAATTGCAGATGAGGGCGCGGCAGAGCAACCAGGATGCCCAAGACATAG
Seq A exon
AGAGAGCTTCGTTTAGGAGCCTGAACCTGCAAGCAGAGTCTGTTAGAGGATTTAATATGGGCCGCGCAATCAGCACGGGCAGTCTGGCCAGCAGCACCATCAACAAACTTGCCGTCCGACCCCTGTCAGTTCAAGCTGAGATTCTGAAGAGGCTGTCCAGCTCAGAGTGGTCGCTTTACCAGCCCCTGCAGAACAGTTCAAAAGAGAAGACTGACAAAGCTTCCTGGGAGGAAAAGCCTAGAGGGATGAGCAAATCGTATCACGATCTCAGTCAGGCCTCTCTCTGTCCTCACCGGAAACAGGTCATTAACATGGAGGCCCTCCCACAAGCCTTTGCGGAGCTGGTGGGAAAACCCTTGTACCCGATGGCAAGATCTGACACAGAGTCACTGGCAGGACTCCCAAAGCTTGATAA
Seq C2 exon
ATACACTGCACAAAAGATGGAGCATTGTTTCGTCACCAGAAAGGGAGATCACACTGGTGAACCTGAAGAAAGATCCAAAACACGGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573_MULTIEX2-1/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.317 C2=0.245
Domain overlap (PFAM):
C1:
PF093805=FERM_C=PD(51.1=83.6)
A:
NO
C2:
PF0059519=PDZ=PU(14.3=38.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAATCACATTACAGAACACGTCA
R:
AGCCGTGTTTTGGATCTTTCT
Band lengths:
246-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types