BtaEX0028968 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014947 | PTPN13
Description
Bos taurus protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) (PTPN13), mRNA. [Source:RefSeq mRNA;Acc:NM_174590]
Coordinates
chr6:103469913-103475377:+
Coord C1 exon
chr6:103469913-103470075
Coord A exon
chr6:103474723-103475140
Coord C2 exon
chr6:103475280-103475377
Length
418 bp
Sequences
Splice sites
3' ss Seq
GCAATCCTGTTTCCTTGTAGAGA
3' ss Score
7.9
5' ss Seq
TAAGTAAGG
5' ss Score
5.07
Exon sequences
Seq C1 exon
AAAAAGAAAATCACATTGCAGAATACTTCAGATGGAATAAAACATGCCTTCCAGACAGACAACAGTAAGATATGCCAGTACCTGCTGCATCTCTGCTCTTCCCAGCATAAGTTCCAGCTGCAAATGAGAGCAAGACAGAGCAACCAAGATGCCCAGGATATTG
Seq A exon
AGAGAGCTTCGTTTAGGAGCCTGAACTTCCAAGCAGAGTCCGTTAGAGGATTTAATATGGGACGAGCAGTCAGCACTGGTAGTCTGGCCAGCAGCACCCTGAACAAACTTGCCGTTCGACCTCTGTCGGTTCAAGCTGAGATTCTGAAGAGGCTCTCCTGCTCAGAGCTGTCGCTTTGCCAGCCATTGCAAAACAGTGCAAAAGAGAAGAATGGCAAAACTGCATGGGAGGAAAAGCCTAGAGGGATGAGTAAATCATACCACGATCTCAGTCAGGCCTGTCTCTACCCTCACCGGAAAAATGTCAATGTTAACATGGAGCCCCCACCACAAACCATTGCGGAGTTGGTAGGAAAAACGCTTCACCAGATGGCAAGATCTGATACAGAATCTCTGGCAGGAGTCACAAAACTCAATAA
Seq C2 exon
TTCAAAGTCTGTTGCGAGTTTAAATAGAAGTCCTGAAAGGAGGAAACATGAATCAGACTCCTCATCCTTTGAAGACCTTGGTCAAGCATATGTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014947-'20-27,'20-26,21-27
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.400 C2=0.618
Domain overlap (PFAM):
C1:
PF093805=FERM_C=PD(51.1=83.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAATCACATTGCAGAATACTTCA
R:
AGAACATATGCTTGACCAAGGTCT
Band lengths:
255-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development