DreINT0070380 @ danRer10
Intron Retention
Gene
ENSDARG00000093651 | ftr23
Description
finTRIM family, member 23 [Source:ZFIN;Acc:ZDB-GENE-070912-322]
Coordinates
chr2:48072862-48074100:+
Coord C1 exon
chr2:48072862-48073484
Coord A exon
chr2:48073485-48074004
Coord C2 exon
chr2:48074005-48074100
Length
520 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ACATTTGTTCCATGTTGCAGAAA
3' ss Score
9.02
Exon sequences
Seq C1 exon
AGTCGTGTTTATCTCTCGGTGTCTAAAATAAAATGGCAGAAGCTAATGTTTTTTGGGCTAAGAATCAGTTCAGCTGTTCAGTGTGTCTGGGTCTCCTGAAGGAGCCAGTGACCATCCCCTGCGGACACAGTTACTGTATGAACTGCATTACTGACTGCTGGAATCAAGATGAGCAGAGGAGAGTTTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAAACAAGAACGTGGTGTTTGCTGAAATTGTGGAGAAACTGAAGATGACAAGAGTCCAAAACGTTGATCCTGCTCCAAGTTATGCTGGACCTGGAGATGTGGAGTGTGATGTTTGTACTGGGATGAAGTACAAAGCTGTTAAGTCCTGTCTGATGTGTCTGAACTCTTATTGTCAAACTCACCTTGAACAACATAACGGTTTCTTTAAAGATAAGAGACATCATTTAATCAATGCCACTGGACGACTGAGAGAGATGACCTGCCCTAAACATGACCGATTGCTGGAGGTTTACTGTCGGACTGACCAGAAGTGCATTTGTTTATTGTGTACGATGGATGAACACAAAAATCATGACACTGTTTCAGCTGAAGCAGAGAGAGCTGAGAAACAG
Seq A exon
GTATGAACTTAAAGCTACTACGGTATATAGTCTAGATGTCAGGGAAGTGCTTGTTGGTGTTTTACATGGAGAGCTTTATGACTGAAAAATACATGTAACATCAAGAAGACGCAGACAAATTTGCACAAAGCACCTCTTTCAAACAGTTAACAGATTTTGATAGACCTAAATGTTGTTGTTTTGAAAAAAAAATAATTCATTTGAAATTTTTAATGCAGGATGCCATCAAATGACAACAAGAGAGGAAGACAATCAGTCAGTAAATAATCATTTGAAACAGACATCAATTATTTTATACATTTGTATCTGTTTATTTTGTTTATTTGTTTGCGCCATTTTGGTTAAAGAAATCTAATTTGTACTCCCTTTCACTTCAGAAAAGGAGGCCTGGAATTCGAAGTTTTTAAATTCAGTCCTAAAGGGTTAAATCGGCATAAGGTTAACTAAATGATAGAACCTTTGAATTATGGATTTAAGGAAAAGTACTGATTAGTGTGTTTACATTTGTTCCATGTTGCAG
Seq C2 exon
AAACCCTTGGGGGGTGTTCAAAGAAAATTTGATCTTAGAATCAAGAGAAAACAGAAGCTGCTATATCAGCTAAAAGAGGCTGTGGAGACTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093651:ENSDART00000143023:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=21.8),PF0064319=zf-B_box=WD(100=20.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTGTCTGATGTGTCTGA
R:
TGAGTCTCCACAGCCTCTTTT
Band lengths:
343-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]