GgaEX0004871 @ galGal3
Exon Skipping
Gene
ENSGALG00000003712 | RAPGEF1
Description
NA
Coordinates
chr17:6903463-6906677:-
Coord C1 exon
chr17:6906525-6906677
Coord A exon
chr17:6904947-6905070
Coord C2 exon
chr17:6903463-6903646
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATACCTGTTGTGTCTTGCAGCCC
3' ss Score
10.66
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCCATCAGAACTTCCCCTTACAGACCGAGAAATGGAGATCCTAAACAAAACAACTAATATGACTCAATCAAACGAGCTACTGACAGACTCCATGGACGAAGAGGTTGCACCTCCTAAACCCCCCCTGCCTTGCATTCGTGTGGCAGAAAACAG
Seq A exon
CCCTCCTCCAGCCTTGCCCCCTAAAAAACGGCAGTCGGCGCCTTCCCCAACCAGAGTGGCAGTTGTGGCCCCCATGAGTCGAGCCACCAGTGGGTCTAGTTTGCCTGTTGGAATCAACAGACAG
Seq C2 exon
GATTTTGATGTTGACTGCTATGCCCAGAGAAGGCTGTCAGGTGGCAGCCACTCCTACGGGGGAGAATCTCCTCGCCTCTCACCGTGCAGCAGCATTGGCAAACTCAGCAAGTCCGATGAGCAGCTCTCTTCTCTGGACCGTGACAGTGGTCAGTGCTCCCGCAACACAAGCTGTGAAACATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003712_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.905 C2=0.839
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCCCTTACAGACCGAGA
R:
CTGAGTTTGCCAATGCTGCTG
Band lengths:
251-375
Functional annotations
There are 1 annotated functions for this event
PMID: 7735837
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: x-ray crystallography. ELM ID: ELMI001098; ELM sequence: PALPPK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]