GgaEX0016586 @ galGal3
Exon Skipping
Gene
ENSGALG00000011078 | PTPN13
Description
NA
Coordinates
chr4:47284208-47286850:-
Coord C1 exon
chr4:47286753-47286850
Coord A exon
chr4:47285253-47285309
Coord C2 exon
chr4:47284208-47284300
Length
57 bp
Sequences
Splice sites
3' ss Seq
TATGTGCATTCATGTTGCAGGTG
3' ss Score
9.98
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
TTCAAAATCTCATGCAGGTTTAAGTAGAAGTCCTGAAAGAAAGAAAAATGAATCGGACTCATCATCCATGGAAGATACCGGGCAAGCCTATGTTGTAG
Seq A exon
GTGTTAGCATGAGTAGCTCTGGAAATCTTCCATCATCAACACCATTAAAAGAGAGCA
Seq C2 exon
GTGACTCTCTGCAAACAACACAGAGCAGAGTTTCCTCACCAGAAAGAGAGATCACTTTGGTGAACCTGAAAAAGGATGAAAAAATGGGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078-'20-26,'20-25,21-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.900 C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(14.3=37.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTTTAAGTAGAAGTCCTGA
R:
AGTGATCTCTCTTTCTGGTGAGGA
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]