MmuEX0037799 @ mm9
Exon Skipping
Gene
ENSMUSG00000034573 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103965733-103979333:+
Coord C1 exon
chr5:103965733-103965895
Coord A exon
chr5:103972427-103972483
Coord C2 exon
chr5:103979244-103979333
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAATTTAATTTATACCACAGGAA
3' ss Score
6.05
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
AAGAAGAAAATCACATTACAGAACACGTCAGATGGAATCAAGCATGCGTTCCAGACGGACAGCAGCAAGGCATGCCAGTACCTGCTGCACCTGTGCTCCTCCCAGCACAAGTTCCAATTGCAGATGAGGGCGCGGCAGAGCAACCAGGATGCCCAAGACATAG
Seq A exon
GAATGAGTTTGCCTAGCTCTGGAAAATCTTCATCCCAAGTCCCCTTTAAAGACAATG
Seq C2 exon
ATACACTGCACAAAAGATGGAGCATTGTTTCGTCACCAGAAAGGGAGATCACACTGGTGAACCTGAAGAAAGATCCAAAACACGGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573_MULTIEX2-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.700 C2=0.237
Domain overlap (PFAM):
C1:
PF093805=FERM_C=PD(51.1=83.6)
A:
NO
C2:
PF0059519=PDZ=PU(14.3=38.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCATGCCAGTACCTGC
R:
TGGTGACGAAACAATGCTCCA
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: