BtaEX0028970 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014947 | PTPN13
Description
Bos taurus protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) (PTPN13), mRNA. [Source:RefSeq mRNA;Acc:NM_174590]
Coordinates
chr6:103475280-103491222:+
Coord C1 exon
chr6:103475280-103475377
Coord A exon
chr6:103476968-103477024
Coord C2 exon
chr6:103491133-103491222
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAATCTAATTTATACTACAGGAA
3' ss Score
5.74
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
TTCAAAGTCTGTTGCGAGTTTAAATAGAAGTCCTGAAAGGAGGAAACATGAATCAGACTCCTCATCCTTTGAAGACCTTGGTCAAGCATATGTTCTAG
Seq A exon
GAATGACTTTGCATAGTTCTGGAAATTCTTCATCCCAAGTACCCTTAAAAGAAAATG
Seq C2 exon
ATGTGCTACACAAAAGATGGAGCATAGCATCTTCACCAGAAAGGGAGATCACTCTGGTTAACCTGAAAAAAGATGCACAGTATGGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014947-'22-29,'22-28,23-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.618 A=0.500 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(14.3=38.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAAAGGAGGAAACATGAA
R:
AGGTTAACCAGAGTGATCTCCCT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development