HsaEX0050971 @ hg19
Exon Skipping
Gene
ENSG00000163629 | PTPN13
Description
protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) [Source:HGNC Symbol;Acc:9646]
Coordinates
chr4:87672180-87679502:+
Coord C1 exon
chr4:87672180-87672277
Coord A exon
chr4:87674162-87674218
Coord C2 exon
chr4:87679413-87679502
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATATTTAATTTATGCCACAGGAA
3' ss Score
7.53
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
TTCAAAGTCTGTTGCGAGTTTAAATAGAAGTCCTGAAAGGAGGAAACATGAATCAGACTCCTCATCCATTGAAGACCCTGGGCAAGCATATGTTCTAG
Seq A exon
GAATGACTATGCATAGTTCTGGAAACTCTTCATCCCAAGTACCCTTAAAAGAAAATG
Seq C2 exon
ATGTGCTACACAAAAGATGGAGCATAGTATCTTCACCAGAAAGGGAGATCACCTTAGTGAACCTGAAAAAAGATGCAAAGTATGGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163629_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.750 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(14.3=38.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTCATCCATTGAAGACCCT
R:
CCAAGCCATACTTTGCATCTTT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)