DreEX0059419 @ danRer10
Exon Skipping
Gene
ENSDARG00000103699 | ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
Coordinates
chr21:9360148-9367978:-
Coord C1 exon
chr21:9367881-9367978
Coord A exon
chr21:9365555-9365614
Coord C2 exon
chr21:9360148-9360237
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCATAATCTCTAGGCG
3' ss Score
9.09
5' ss Seq
CTGGTACGA
5' ss Score
7.84
Exon sequences
Seq C1 exon
TTTGTCGGTGGATGACAGCCCTCGCTGGAGCCCTAAAAGCCTAAAGAAAGAGTCAGACTCTTCATCCTGCGAGGACACGGGACAGGCATATGTCGTAG
Seq A exon
GCGTGAGCATGCACAGCTCTGGAGTTCCCTCCACTCCTGCCTCCTCCATAGGAATCACTG
Seq C2 exon
ATTCCCTGAAGAAAAAAGTGCAAGCTTTACCCTCCCCAGAGCGAGAGATACAGACTGTAAATCTGAAGAAAGACGTAAAGTACGGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103699_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=0.964 C2=0.606
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(14.3=38.7)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTGGAGCCCTAAAAGC
R:
TCTGTATCTCTCGCTCTGGGG
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]