GgaEX0016763 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:23525654-23527640:-
Coord C1 exon
chr7:23527496-23527640
Coord A exon
chr7:23526377-23526571
Coord C2 exon
chr7:23525654-23525811
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTGTTCCTGTGCTAGGCT
3' ss Score
8.94
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGACCAAACTCTTTTGTGATCATCACAGCAAATCGAGTGATTCACTGCAACAGTGACACCCCTGAGGAGATGCATCACTGGATCTCCCTGCTGCAGAAACCGAAAGGCGAATCTAAGGTGGATGGCCAGGAATTCCTTGTGAGAG
Seq A exon
GCTGGCTTCATAAAGAGGTTCAGAGCAGCAACAAGGTGTCCTCCCTGAAGATGAAGAAACGCTGGTTTGTGCTGACAAACACTGCCCTTGATTACTACAAGTCGTCTGAGCGCACAGCTGCCAAGCTTGGCACGCTTGTGCTCAATAGCCTCTGCTCTGTAGTGCAGCCTGACGAGAGGGTCTTTAAAGACACAG
Seq C2 exon
GCTATTGGAACATCATTGTTCATGGGCGAAAGCACTCGTACAGACTGTACACGAAGCTGCTGAATGAAGCTATGCGCTGGGCCTCTGCCATTCAAGGTGTCATTGACAGCAAAGTTCCCATAGAAACACCTACACAACAACTCATTCGTGACATTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172-'40-41,'40-40,41-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(2.9=6.1)
A:
PF0016924=PH=FE(62.5=100)
C2:
PF0016924=PH=PD(33.7=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACACCCCTGAGGAGATG
R:
TGTCACGAATGAGTTGTTGTGT
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]