GgaEX0016763 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEA4]
Coordinates
chr7:21439715-21441699:-
Coord C1 exon
chr7:21441557-21441699
Coord A exon
chr7:21440438-21440632
Coord C2 exon
chr7:21439715-21439872
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTGTTCCTGTGCTAGGCT
3' ss Score
8.94
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACCAAACTCTTTTGTGATCATCACAGCAAATCGAGTGATTCACTGCAACAGTGACACCCCTGAGGAGATGCATCACTGGATCTCCCTGCTGCAGAAACCGAAAGGCGAATCTAAGGTGGATGGCCAGGAATTCCTTGTGAGAG
Seq A exon
GCTGGCTTCATAAAGAGGTTCAGAGCAGCAACAAGGTGTCCTCCCTGAAGATGAAGAAACGCTGGTTTGTGCTGACAAACACTGCCCTTGATTACTACAAGTCGTCTGAGCGCACAGCTGCCAAGCTTGGCACGCTTGTGCTCAATAGCCTCTGCTCTGTAGTGCAGCCTGACGAGAGGGTCTTTAAAGACACAG
Seq C2 exon
GCTATTGGAACATCATTGTTCATGGGCGAAAGCACTCGTACAGACTGTACACGAAGCTGCTGAATGAAGCTATGCGCTGGGCCTCTGCCATTCAAGGTGTCATTGACAGCAAAGTTCCCATAGAAACACCTACACAACAACTCATTCGTGACATTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(2.9=6.1)
A:
PF0016924=PH=FE(62.5=100)
C2:
PF0016924=PH=PD(33.7=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACACCCCTGAGGAGATG
R:
TGTCACGAATGAGTTGTTGTGT
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]