GgaEX1046983 @ galGal3
Exon Skipping
Gene
ENSGALG00000011078 | PTPN13
Description
NA
Coordinates
chr4:47305540-47327948:-
Coord C1 exon
chr4:47327855-47327948
Coord A exon
chr4:47315032-47315595
Coord C2 exon
chr4:47305540-47305635
Length
564 bp
Sequences
Splice sites
3' ss Seq
GAAATGTCTCCTTGTTCCAGGAA
3' ss Score
9.01
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATGGATCAGCTTTCTTGCAATGGAGATAAAAAATTGCAGCCAGACAGGAGCCAGGCAATTCGGGAGAGGCTGAGGGGAAAAGGACTGCCCACAG
Seq A exon
GAAAAGCCTCAGTGGTTGATGCACGTGACGAACACAAGACTAATTTCTCTCAACAGACAATGCTTAACAAAGGGCTTAGCAAGTCGATGGGATTTCTGGCCATGAGAGGAACACAAGGCGAAGAGGAATTTTTCCAGGGCATTTCTTCAGATTACAACTCAGGACAGGAAGATTCTTTCTATCCTTACAGATGTAAAACCAATGAGTTTGAAAACAAAGGTCACCTCCATACAGATGCAGCTCCCAAGCGGAAGGTATGGGCTTCCTCCACAGACTTGCTTTGCACGACCAACAGAGCAACTGAAAGGGACCATGCTTCAGACTCTCACAGGCACAGTCATCAATGTGAGACCTTCGCGGTACGGACTTCTACTATGACCAGAAACAAAGAGGCTAGATACTCCGATGGGAGCATAGCACTGGATATCTTTGGACCTCAGAAAGTGGACCAAACGTGCCACGTGCCTGAGACATCAACTTCTGCAGCAATATCGAGTGCCTTTGACAGGATAAGGGAGAGACAGAAGAAGTTGCAGCTCCTGAGGGAAGCCATGAGTGTAGAAG
Seq C2 exon
AGCCTCTGAGAAGGTACAAATCATACCACAGCGATGTTTACAGTACTTCGAGTGAAAGTCCATCCATTATTTCTTCAGAAGCAGATTTCAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.476 C2=0.606
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATCAGCTTTCTTGCAATGGA
R:
CTTGCCTGAAATCTGCTTCTGA
Band lengths:
190-754
Functional annotations
There are 1 annotated functions for this event
PMID: 12529439
Here the authors show that PTP-BL is involved in the regulation of cytokinesis. The authors demonstrate localization of endogenous PTP-BL at the centrosomes during inter- and metaphase and at the spindle midzone during anaphase. Finally PTP-BL is concentrated at the midbody in cytokinesis. The authors show that PTP-BL is targeted to the midbody and centrosome by a specific splicing variant of the N-terminus characterized by an insertion of 182 amino acids (HsaEX0050973). Additionally, the splice variant with the insert leads to multinucleated cells when overexpressed in HeLas.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]