GgaEX1046985 @ galGal3
Exon Skipping
Gene
ENSGALG00000011078 | PTPN13
Description
NA
Coordinates
chr4:47274792-47276771:-
Coord C1 exon
chr4:47276557-47276771
Coord A exon
chr4:47276356-47276454
Coord C2 exon
chr4:47274792-47275153
Length
99 bp
Sequences
Splice sites
3' ss Seq
GAACCCAAATGTGGCCATAGGAA
3' ss Score
3.7
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
AGAACACATTTGAGGTAAAGCTGCTGAAGAACAGCTCAGGTCTCGGGTTCAGCTTCTGCCGTGAGGATAATCCTACTCCGGAGCAGCTGGGCTCAACCATTGTGAGGGTGAAGAAGCTCTTCCCTGGGCAACCTGCTGCAGAGAGTGGGCAGATAGACATTGGGGACGTCATTCTCAAAGTGAATGGGGCATCGCTCAAGGGTTTATCCCAGCAG
Seq A exon
GAAGTCATCTCTGCACTGAGGGGAACGTCTCCAGAAGTCTCTCTTCTCCTTTGTCGGCCACCGCCTGGTATACTGCCAGACATCGATCCTGCTTTGTTG
Seq C2 exon
ACTCCCATCACTTCACCCCTACAAGTGTTTCCAGATGTCAACAGAGAAGTTTCTGGTCCATCAAAGGAAGAACAGGGTGACAGCTCAGATGAAAATGAAACCACTGATTTGAGCAAGAGAAGACTGAAGTCTCCCTCTAGGAGAGACAGCTACAGTGACAGCAGCAGGAGTGGCGATGAGGAGGCGATGGACTCACTGGCACAGTTGGGCCAGAGCTGGAATTCTGCCCTCTGCCAGCCTCCAGATGAAGCTGTGACACAGGCACACAGCCAGCACGAGGCACACAGTGCTCAGGGCGGTGCTCTTCGCACCATCTTGTATTCTGCGCGTGAGACTCCTAGCAGGTCAGAGCTTGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078-'31-37,'31-36,32-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.333 C2=0.901
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(77.9=93.1)
A:
PF0059519=PDZ=PD(19.8=51.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGAGTGGGCAGATAGA
R:
TCATCTGAGCTGTCACCCTGT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]