BtaEX0028975 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014947 | PTPN13
Description
Bos taurus protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) (PTPN13), mRNA. [Source:RefSeq mRNA;Acc:NM_174590]
Coordinates
chr6:103499800-103501924:+
Coord C1 exon
chr6:103499800-103500014
Coord A exon
chr6:103500120-103500218
Coord C2 exon
chr6:103501560-103501924
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCATTCATGGTTCCCCCAGGAG
3' ss Score
7.57
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
AGAATACATTTGAGGTGAAATTGCTGAAAAATAGCTCAGGCCTAGGATTCAGTTTTTCTCGAGAGGATAATGTTATACCCGAGCAAATGAACACCAGCATAGTAAGGGTTAAAAAGCTCTTTCCTGGACAGCCGGCTGCAGAAAGTGGACAAATTGATGTGGGAGATGTTATCTTAAAAGTGAATGGAGCCTCTTTGAAAGGATTGTCTCAACAG
Seq A exon
GAGGTCATATCCGCTCTCAGGGGAACGTCTCCAGAAGTATCCTTGCTCCTCTGTAGACCTCCACCTGGGGTGCTACCAGAAATTGACCCTGCTCTTTCG
Seq C2 exon
ACCCCCTTGCACTCTCCAGCACAAGTACCTCTGAACAACAGCAAAGACCCTCCTCAGACAGCGTGTGCGGAGCAAGGCACCAGCTCAGATGAAAATGAGATGTCTGACAAAAACAGAAGACCATGCACGTCCCCATCCAGGAGAGATAGTTACAGTGATAGCAGTGAGAGTGGAGAAGATGACTTAGCGAAAGCTCCAGCAAAGATACCAAACATGAGCTGGAGCTCAGCTTTGCAACAGACTCTAAGCAACATGATGTCACAGGCACAAAGTCATCACGACACACTCAGGAGTCAAGAAGATCCCATTTGTACCATGTTTTACTATCCTCAGAAAGTACCTAATAAGCCAGAACATGAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014947_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.667 C2=1.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(77.9=93.1)
A:
PF0059519=PDZ=PD(19.8=51.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGAGCAAATGAACACCAG
R:
GGTACTTGTGCTGGAGAGTGC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development