MmuEX6019174 @ mm10
Exon Skipping
Gene
ENSMUSG00000034573 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103561932-103564339:+
Coord C1 exon
chr5:103561932-103562146
Coord A exon
chr5:103562275-103562373
Coord C2 exon
chr5:103564011-103564339
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTGTGTGCCTCCAGGAC
3' ss Score
12.28
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATAATACATTTGAGGTCAAGCTGTTTAAAAATAGCTCAGGCCTTGGATTCAGTTTTTCTCGGGAAGATAATCTTATACCAGAACAAATAAATGGCAGCATAGTAAGGGTTAAAAAGCTCTTCCCTGGACAGCCGGCAGCAGAAAGTGGGAAAATCGATGTTGGAGATGTTATATTGAAAGTTAACGGAGCCCCCTTGAAGGGACTGTCTCAGCAG
Seq A exon
GACGTCATCTCTGCTCTCAGGGGAACAGCTCCAGAAGTGTCCTTGCTTCTCTGCAGACCGGCACCTGGTGTGCTACCAGAAATCGATACTACATTTTTG
Seq C2 exon
AACCCACTCTACTCTCCAGCAAACTCATTTCTAAACAGCAGTAAAGAGACTTCGCAGCCATCATCCTCAGTAGAGCAGGGTGCCAGCTCGGACGACAATGGGGTGTCTGGCAAAACCAAGAACCATTGCAGGGCTCCATCCAGGAGAGAGAGTTACAGCGACCACAGCGAGAGTGGAGAGGATGACTCCGTGAGAGCACCAGCCAAGATGCCAAATGTGACCCGAGTGGCAGCCTTTCCACACGAAGCACCGAGAAGCCAGGAAGAGTCCATATGTGCCATGTTTTACCTCCCTCGGAAAATACCCGGAAAGCTGGAGTCCGAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573-'49-50,'49-46,50-50=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.091 C2=0.734
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(77.9=93.1)
A:
PF0059519=PDZ=PD(19.8=51.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCTCTTCCCTGGACAGC
R:
TACTGAGGATGATGGCTGCGA
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types